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Other Possibly Helpful Tools

• OMOP CDM FAQs: https://ohdsi.github.io/CommonDataModel/faq.html

• Recommended by Health Data Research Gateway: This website somebody here shown to Jan at the Boston CZI grantees meeting: “gave me where she’s been helping to map clinical data to omop for a UK initiative. Said to github has some pipeline tools we might be interested in:  https://www.healthdatagateway.org “ https://github.com/HDRUK ; Health Data Research Technology Community Slack channel

  • Carrot-Mapper: Carrot-Mapper enables conversion of data to the OMOP Common Data Model, without data being egressed from its secure location, nor requiring access to the secure location. Carrot-Mapper automates as much of the process as possible, and also enables users to reuse each others' mappings. Carrot-Mapper pairs with Carrot-CDM to complete the OMOP conversion process.

  • CaRROT-CDM: The primary purpose of the CaRROT-CDM package is to Extract input datasets and Transform them using mapping rules defined in a json file, outputting formatted datasets in tsv format that can be Loaded into a database or other destination (ETL).

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