Page Comparison

Wei (UCL), Siddharth, Romain, Eudson, Michael

• Orthanc integration

  • Flows:

    • Order made in OpenMRS (radiology order planned in next 2 months) to be sent to Orthanc

    • Periodic sync from Orthanc to OpenMRS

    • Orthanc ID to be added to OpenMRS for mapping

  • Questions:

    • How to map/merge patients coming from Orthanc to OpenMRS ID? → For now, direct 1:1 mapping between the 2 systems (No CR)

    • SSO for login and privilege integration - Orthanc authentication Documentation and repo

  • Priority:

    • Link to patient/study in Orthanc in OpenMRS patient file

    • Later on, we can imagine a preview or iframe in OpenMRS with imagery

  • Next:

    • Add EIP-OpenMRS-Orthanc routes in Ozone repo (new repo created: https://github.com/ozone-his/eip-openmrs-orthanc/tree/main )

Wei (UCL), Siddharth, Romain, Eudson, Michael

• Orthanc integration

  • Flows:

    • Order made in OpenMRS (radiology order planned in next 2 months) to be sent to Orthanc

    • Periodic sync from Orthanc to OpenMRS

    • Orthanc ID to be added to OpenMRS for mapping

  • Questions:

    • How to map/merge patients coming from Orthanc to OpenMRS ID? → For now, direct 1:1 mapping between the 2 systems (No CR)

    • SSO for login and privilege integration - Orthanc authentication Documentation and repo

  • Priority:

    • Link to patient/study in Orthanc in OpenMRS patient file

    • Later on, we can imagine a preview or iframe in OpenMRS with imagery

  • Next:

    • Add EIP-OpenMRS-Orthanc routes in Ozone repo (new repo created: https://github.com/ozone-his/eip-openmrs-orthanc/tree/main )

• Deployment of dev-his.openmrs.org

  • Done, needs to fix the app switcher config. Fixing in progress.

  • Update on the README to point to direct access to apps by URL.

  • Next:

    • Enable SSO.

    • Enable Ozone Analytics

• Stock & Price visible in O3 upon ordering.

  • openmrs-module-fhirproxy is now done.

  • fhir-odoo API is now done.

  • Need to implement the FHIR endpoints in Billing & Inventory OpenMRS modules. Amos Laboso to reach out to Mekom regarding coding those FHIR endpoints.

  • UI implementation is happening ( Usama Idriss Kakumba assigned to

    Jira Legacy
    server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key O3-4009

    ).

  • Testing currently in progress: finding some issues: initial development of OpenMRS module FHIR proxy done against 2.4.x and appears not compatible with 2.6.x, currently being looked at.

• LIMS integration

  • SENAITE enabled as the default LIMS option in OpenMRS distro HIS

  • OEG integration still halted. Progress pushed to and documented on https://github.com/ozone-his/eip-openelis-openmrs

• Deployment of dev-his.openmrs.org

  • Done, needs to fix the app switcher config.

    • Emmanuel Nyachoke to fix it this week.

  • Demoed at the conference multiple times.

• Stock & Price visible in O3 upon ordering.

  • openmrs-module-fhirproxy is now done.

  • fhir-odoo API is now done.

  • Need to implement the FHIR endpoints in Billing & Inventory OpenMRS modules. Amos Laboso to reach out to Mekom regarding coding those FHIR endpoints.

  • UI implementation is happening ( Usama Idriss Kakumba assigned to

    Jira Legacy
    server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key O3-4009

    ).

• Ozone Analytics

  • Ozone Analytics is now open source: https://github.com/ozone-his/ozone-analytics

• LIMS integration

  • OEG integration work is halted until the missing features are implemented.

  • Will touch base weekly to assess the progress and resume work when a number of the features are fixed.

  • Enable SENAITE as the default LIMS option currently in progress (PR in review and a bug reported)

    Jira Legacy
    server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-15

• Deployment of dev-his.openmrs.org

  • Work necessary in Ozone to build bundled Docker images is now done and currently being deployed (on the Ozone side).

  • Deployment of OpenMRS Distro HIS should be done through a Bamboo job - done by today or tomorrow.

• FHIR API for Odoo

  • Proposed architecture: https://miro.com/app/board/uXjVKv4-SII=/?share_link_id=473611286361

  Image Added

  • Work has started.

    • Odoo Java Client: we will be using the Odoo Java API project as a Java client for Odoo XML RPC API → https://mekomsolutions.atlassian.net/browse/OZ-688 is not necessary anymore.

    • OpenMRS module FHIR Proxy work is started. Will get more updates after the Ozone internal call.

    • HAPI FHIR server work started today. Will get more updates after the Ozone internal call.

• MambaETL

• Ozone Analytics

  • Open sourcing of Ozone Analytics will be started by Kakumirizi Daud this week.

• LIMS integration

  • OEG integration work is halted until the missing features are implemented.

  • Will touch base weekly to assess the progress and resume work when a number of the features are fixed.

  • Will enable SENAITE as the default LIMS option for now.

    Jira Legacy
    server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-15

• Deployment of dev-his.openmrs.org

  • Delayed few days: init. estimate on end of last week. Looking at mid this week now. (technical work is done so that child distributions can build those Docker-embedded images).

  • Unable to reach out to Rafal. Scott has not answered regarding if a Bamboo job already exists or not.

• FHIR API for Odoo

  • Proposed architecture: https://miro.com/app/board/uXjVKv4-SII=/?share_link_id=473611286361

  • Image Added

  • Work has started.

    • https://github.com/openmrs/fhir-structures-backport-r4/pull/1

    • https://github.com/mekomsolutions/odoo-java-client

    • https://github.com/ozone-his/fhir-odoo

• MambaETL

  • Technical architecture call on Thursday

    • Simplicity of deployment (OMODs and/or SQL script)

    • Ability to dynamically flatten encounters and transpose questions as columns

    • Concerns over:

      • Change Data Capture done through monitoring some specific database fields (date_changed, date_voided…) instead of default mechanisms (binlog…)

      • Performance concerns (due to a lot of indexing) for 10M records databases.

      • Little to no testing.

• Ozone Analytics

  • Open sourcing of Ozone Analytics will be started by Kakumirizi Daud this week.

• OEG integration

  • Project updates shared by Suruchi: integration work is being delayed (+1 week already) by low responsiveness from OEG devs. Attempting to setup weekly calls.

  • Eudson advises to not implement any workaround and rather wait for OEG folks to answer.

• Deployment of dev-his.openmrs.org

  • Development work needed to deploy embedded distro Docker images is well advanced. Est. done by mid-week.

  • Then reaching out to Rafal in OpenMRS community to deploy via Bamboo.

  • Q: Emmanuel Nyachoke where to deploy the OpenMRS Distro HIS-embedded Docker images?

• FHIR API for ERPNext (or Odoo)

  • From Slack message Odoo might be a better fit for the default ERP system in Ozone and OpenMRS distro HIS.

  • Work needed to have ERPNext expose a FHIR API still needs to be documented as an example. Current work could be pushed and documented so to be picked up and resumed by other group.

  • ChargeItemDefinition and InventoryItem exposed in Billing & Pharmacy modules needs to start. Mekom will provide guidance. Need to use the https://github.com/ozone-his/fhir-structures-backport-r4/ library.

• MambaETL + Oz Analytics

  • Plan a call this week between UCSF and Mekom to look at Mamba ETL in terms of incremental updates.

• DHIS2 / DHIS Tracker integration:

  • Integration with Tracker. Advises to look at the Ethiori REDCap integration.

  • Integration DHIS2 (analytics). Advises to look at the Ozone Analytics when integrated data analytics.

OEG integration:

• OpenMRS patient and Lab test order is synced in OpenELIS

  Screen Recording 2024-08-05 at 10.20.53 AM.mov

• Results from OpenELIS are synced in OpenMRS

  Screen Recording 2024-08-12 at 11.16.16 AM.mov

• Modification of lab order cancels the existing lab order in OpenELIS and creates a new lab order

  Screen Recording 2024-08-12 at 11.30.42 AM.mov

• Discontinue lab order in OpenMRS cancels the Incoming Order in OpenELIS

  Screen Recording 2024-08-12 at 12.09.02 PM.mov

Deployment of dev-his.openmrs.org.

• In progress: 2 PRs:

  • https://github.com/ozone-his/ozone/pull/83/files

  • https://github.com/ozone-his/ozone-docker-embedded/blob/main/docker/docker-compose-embedded.yaml.template

• Work halted this week due to vacations. Will resume next week.

FHIR API for ERPNext:

• Architecture still in progress. Leaning towards running HAPI FHIR to transform and expose FHIR objects from the ERPNext database.

  • Architecture will be defined this week and implementation started the week after.

• Analytics in OpenMRS Distro HIS: Ozone Analytics + Mamba ETL

  • 3 tickets to be worked on:

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-11

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-10

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-9

  • Planned a demo session of Mamba ETL w/ support of incremental changes lead by UCSF. (to be scheduled to next week)

• OEG integration in progress:

  • Notion board: https://www.notion.so/mekom/OpenMRS-disto-HIS-integrated-with-OpenELIS-Global-597eea5b1d6e4305b0dc472b9682d505?pvs=4

  • Automated configuration w/ OEG only supported w/ Liquibase.

  • Unblocked to create Patients visible in new UI.

  • Mid-next week first delivery. Identify exactly what will be demoed by this time. suruchi dhungana to update.

• Deployment of dev-his.openmrs.org server:

  • Will be looked at tomorrow.

• FHIR specs for ERP Processes completed. Link: https://docs.google.com/document/d/1uvJwYCGZg_wnt5eMCFLBIJoWU4CQaUWSKENvHrR-MEg/edit?usp=sharing

  • Designs for Price + Stock upon ordering will be added in Zeplin today.

    • Need some architecture call with Wyclif regarding exposing the FHIR API of the ERP (and authenticating to it)

• SSO: Should be configurable to be enabled by implementers.

• Custom systems integration:

  • Ethiori being integrated with a custom LIMS. → good progress done in Ethiori hackathon.

  • Used as an example to add more integrations.

• Enabling SENAITE in OpenMRS distro HIS:

  • Stephen Senkomago Musoke starting evaluation of SENAITE integration.

    • Patients are synced

    • Lab orders not tested as unable create orders with admin users. Reached out on the #ozone channel.

    • Mekom reported some issues with the Lab order basket (unable to revise order).

• DHIS2 integration by Michael Bontyes . Interested in looking UgandaEMR existing DHIS2 integration.

  • MSF scope: Initialize a new OpenMRS instance with DHIS2 patients (w/ DHIS2 ID + demographics)

    • Using OpenFn to send the new patients and data points.

    • Business logic available on GitHub.

• Analytics in OpenMRS Distro HIS: Ozone Analytics + Mamba ETL

  • 3 tickets to be worked on:

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-11

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-10

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-9

  • Planned a demo session of Mamba ETL w/ support of incremental changes lead by UCSF. (to be scheduled to next week)

• OEG integration in progress:

  • Notion board: https://www.notion.so/mekom/OpenMRS-disto-HIS-integrated-with-OpenELIS-Global-597eea5b1d6e4305b0dc472b9682d505?pvs=4

  • EDD mid/end-aug

• Deployment of dev-his.openmrs.org server:

  • Will be looked at next week.

• FHIR specs for ERP Processes completed. Link: https://docs.google.com/document/d/1uvJwYCGZg_wnt5eMCFLBIJoWU4CQaUWSKENvHrR-MEg/edit?usp=sharing

  • Designs for Price + Stock upon ordering will be added in Zeplin today.

    • Need some architecture call with Brandon regarding the ability for O3 to query multiple backends.

    • Need some architecture call with Wyclif regarding exposing the FHIR API of the ERP (and authenticating to it)

• Custom systems integration:

  • Ethiori being integrated with a custom LIMS.

  • Used as an example to add more integrations.

  • The week after next, prepare a demo/call to run through the Ethiori LIMS integration compared to say, SENAITE integration).

• Enabling SENAITE in OpenMRS distro HIS:

  • Stephen Senkomago Musoke starting evaluation of SENAITE integration. Will provide more updates on #ozone channel by EOD.

• DHIS2 integration by Michael Bontyes . Interested in looking UgandaEMR existing DHIS2 integration.

• Analytics in OpenMRS Distro HIS: Ozone Analytics + Mamba ETL

  • 3 tickets to be worked on:

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-11

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-10

    • Jira Legacy
      server System Jira serverId dd5f38d5-f8f4-3f41-9551-b59f4841491c key HIS-9

  • We can assume that MambaETL is supporting incremental changes.

• OEG integration in progress: Exact extent of the work is identified. Mekom to outline a timeline and provide regular updates on this call.

• Deployment of dev-his.openmrs.org server in progress: Mekom and OpenMRS devops have met: Need to modify Ozone so that it provides Docker images with the configs+binaries embedded in the image. Work should be started around next week.

• FHIR specs for ERP Processes completed. Link: https://docs.google.com/document/d/1uvJwYCGZg_wnt5eMCFLBIJoWU4CQaUWSKENvHrR-MEg/edit?usp=sharing

  • Focus on the common parts of ERP processes:

    • Stock levels displayed upon ordering.

    • Product price displayed upon ordering.

  • Comparison between FHIR spec vs OpenMRS designs in progress. Done by Kevin.