Patient Flags Module
Overview
The Patient Flags module allows users to create "flags" that generate warning messages in the Patient Dashboard.
A flag is simply some criteria (stored in a string), and an associated message string. The patient flag module computes the flags for a patient (or a group of patients) when in form submission or do this as AOP for data submitted outside of forms and save the results in the database table. Whenever a Patient Dashboard is loaded, it loads the pre-computed patient flags in the database table and the associated message string is displayed. The message string can be simple string, or a code for a localized message stored in message.properties.
All flags can be evaluate against all patients in the system via on the Administration page.
In OpenMRS 2.x, the flags are shown in the patient dashboard under the patient flag section,
In the Legacy UI of OpenMRS, flag messages can be configured to be displayed in two primary locations,
patient header
patient overview section
An example of a patient flag displayed in the patient header:
:
An example of flags displayed in the Overview section:
Download
User Guide
On the Administration page, the Patient Flags section provides options to Manage Flags, Manage Tags, Manage Priorities, Manage Flag Display, and Find Flagged Patients.
Use the Manage Flags option to create new flags, and to edit and remove existing ones.
When creating or editing a flag, it may be assigned a priority, which determines the order of flags the style of text when flag messages are displayed on the patient dashboard. Â Priority levels and display styles can be set via the Manage Priorities page. A style for a priority can be any valid attribute that can be used within an HTML <span> tag. For example, to create priority where message text appears in red, set the style property to:
"color:red"
Flags can also be associated with one or more tags, which are used to group flags together and to control what specific users (based on role) will see a flag, as well as where the flags are displayed. Use the Manage Tags options to create and edit tags. A tag can be associated with one or more roles and one or more display locations (i.e. the patient dashboard header or patient dashboard overview). Any flag that is associated with a tag will only be displayed in the location(s) associated with the tag, and to a user who has a role associated with the tag.
Note that if a flag has no tags associated with it, it defaults to a "global" flag and is visible to all users in all locations.
The Find Flagged Patients allows one to test a flag, or set of flags, against all Patients in the system.
Flag Types
The module provides for the creation of four types of flags:
Groovy Flag
This flag takes a Groovy script as it's criteria. The script should return a Cohort of all the Patients that should evaluate to "true" for the given flag.
Before execution, the Cohort to test is bound to the variable "testCohort". The shell is configured so that the major OpenMRS services are bound to a variable of the same name, as in the Groovy Module (i.e. the patient service is bound to "patient"). Also, org.openmrs.* is imported by default.
As an example, the following script will flag all female patients in the test Cohort:
result = patientSet.getPatientsByCharacteristics("f", null, null);
return org.openmrs.Cohort.intersect(result, testCohort);
Note that the evaluator implicitly intersects the results returned by script with the test Cohort so the above script could simply be written as:return patientSet.getPatientsByCharacteristics("f", null, null);
Security issues with Groovy scripts
One potential problem with Groovy flags is that a Groovy script could potentially be destructive. In most cases, we would like to restrict Groovy flags to only have view-related privileges. To that end, a specific username must be associated with Groovy flags. When Groovy flags are evaluated, they are only allowed, by proxy, the set of privileges associated with that user.
As a default, the module sets the Groovy flag username to the username defined in the scheduler.username global property. As this user is most likely a super-user, it is recommended that the Groovy flag username be changed to a user with a more limited set of privileges--perhaps even a dummy "Groovy user" created specifically for this purpose. The Groovy username can be changed in the "Manage Patient Flags Properties" section.
Note that when creating and editing Groovy flags, the privileges allowed are further restricted by those privileges assigned to the current user.
SQL Flag
A SQL flag takes a SQL statement as it's criteria. The SQL should be a SELECT that returns all Patients that match the specific criteria. For example, to flag all Patients that have an upcoming encounter scheduled, the criteria would be:
SELECT e.patient_id FROM encounter e WHERE e.encounter_datetime > now()
The evaluator implicitly intersects the results returned by the SQL statement with the set of patients being tested.
Note that the SQL statement MUST include ".patient_id" somewhere within the query (where "" can be any non-whitespace characters--for instance, the "e.patient" in the above query fulfils this requirement); the evaluator parses out this substring and uses it to append a WHERE (or AND) to the end of the query statement to restrict the query to a single patient when testing against a single patient. For instance, when attempting to test the above criteria against the patient with patient_id 2, the evaluator executes the following criteria: SELECT e.patient_id FROM encounter e WHERE e.encounter_datetime > now() AND e.patient_id=2
Note that when executing the SQL statement, the evaluator sets the selectOnly parameter of the Administration Service's executeSQL method to "true", so that users can't modify the database. Also, while any user should be able to execute a SQL flag, only those users with the SQL Level Access privilege are able to create or modify SQL flags.
Logic Flag
A logic flag takes as it's criteria a logic string compatible with OpenMRS logic. For instance, the criteria "CD4 COUNT" > 200 AFTER 2009-10-01 will flag all Patients who have a CD4 Count greater than 200 after October 1st, 2009.
Custom Flag
Custom flags can be defined by writing a custom flag evaluator. A custom flag evaluator is any class that implements the FlagEvaluator interface:
Display Points
Currently flags can be configured to display in the patient dashboard header and patient dashboard overview. However, it is possible to create new display points in other modules.
First, the display point should be added to the database:
Then to retrieve a list of flags for a specified patient, user, and display point combination:
Finally, you can loop through the result set and display the flags as you like. For example:
Global Properties
patientflags.defaultPatientLink - when viewing a list of patients generated using the "Preview" functionality, this defines the link that will be anchored to each patient. Â The patient id will be appended to end of the link in the format "patientId=123". If no value is specified, it links to the patient dashboard by default.
Required Privileges
Manage Flags and Manage Tags require "Manage Flags" privilege
Find Flagged Patients requires "Test Flags" privilege
Developer Guide
Get the Code
The module can be checked out through git at https://github.com/openmrs/openmrs-module-patientflags
You can build the module like any other mavenized module by doing a
mvn clean install
in the root module package.
REST endpoints
Method | URL | Parameters / Body | Description | Rep Default | Rep Full |
---|---|---|---|---|---|
Priority | |||||
GET | /ws/rest/v1/patientflags/priority/{uuid or name} | Â | Fetches unique priority by name or uuid |
|
|
GET | /ws/rest/v1/patientflags/priority | none | Fetches all priorities | Â | Â |
GET | /ws/rest/v1/patientflags/priority | q | Searches priority by name | Â | Â |
POST | /ws/rest/v1/patientflags/priority | name, rank style | Create with properties in request | Â | Â |
POST | /ws/rest/v1/patientflags/priority/{uuid or name} | name, rank style | Update with properties in request | Â | Â |
DELETE | /ws/rest/v1/patientflags/priority/{uuid} | Â | Deletes the record | Â | Â |
Flag | |||||
GET | /ws/rest/v1/patientflags/flag/{uuid or name} | Â | Fetches unique flag by uuid or name |
|
|
GET | /ws/rest/v1/patientflags/flag | none | Fetches all flags | ||
GET | /ws/rest/v1/patientflags/flag |
| Searches data by specified filters. | ||
POST | /ws/rest/v1/patientflags/flag | name, criteria, evaluator, message, priority, enabled, tags (comma separated) | Create with properties in request | Â | Â |
POST | /ws/rest/v1/patientflags/flag/{uuid} | name, criteria, evaluator, message, priority, enabled, tags (comma separated) | Update given uuid with properties in request | ||
DELETE | /ws/rest/v1/patientflags/flag/{uuid} | Â | Delete from database | Â | Â |
Tag | |||||
GET | /ws/rest/v1/patientflags/tag/{uuid or name} | Â | Fetches unique tag by uuid or name |
|
|
GET | /ws/rest/v1/patientflags/tag | none | Fetches all tags | ||
GET | /ws/rest/v1/patientflags/tag |
| Fetches tag by name | ||
POST | /ws/rest/v1/patientflags/tag | name, roles, displayPoints | Create with properties in request | Â | Â |
POST | /ws/rest/v1/patientflags/tag/{uuid} | name, roles, displayPoints | Update given uuid with properties in request | ||
DELETE | /ws/rest/v1/patientflags/tag/{uuid}?purge | Â | Delete from database | Â | Â |
Display Point | |||||
GET | /ws/rest/v1/patientflags/displaypoint | none | Fetches all display points |
| not supported |
Patient Flag | |||||
GET | /ws/rest/v1/patientflags/patientflag/{uuid} | Â | get generated patient flag by uuid |
|
|
GET | /ws/rest/v1/patientflags/patientflag |
| Searches patient flags by patient |
Release Notes
Version 3.0.7
Version 3.0.6
Version 3.0.5
Version 3.0.4
Version 3.0.3
Version 3.0.2
Version 3.0.1
Version 3.0.0
Version 2.1.0
Version 2.0.0
Version 1.3.4
Version 1.3.3
Version 1.3.2
Reverted change made in 1.3.1 since excluding antlr and asm jars was causing problems with executing Groovy flags
Added maven plugin to add svn revision number to module version number
Version 1.3.1
Fixed issue in 1.3.0 where antlr and asm jars were being included in the lib folder of the module (this is redundant since they are being provided by OpenMRS core)
Version 1.3.0
Updated to use OpenmrsClassLoader when instantiating an evaluator (to facilitate the use of custom evaluators in other modules)
Mavenized codebase
Version 1.2.9
Modified implementation so that flags and associated metadata can be shared using the Sync module
Removed auto-creation of default priorities (to facilitate sync)
Version 1.2.8.1
Removed "spring-form.tld" from jsp pages to make module compatible with OpenMRS 1.7, since "spring-form.tld" is included in the OpenMRS header as of 1.7
Version 1.2.7.1
Modified SQL Evaluator so that it will not return voided patients
Version 1.2.7
Fixed ticket http://dev.openmrs.org/ticket/2264
Version 1.2.6
Updated to be compatible with OpenMRS 1.6
Version 1.2.5
Improved Groovy flag evaluator so that privileges given to Groovy scripts can be better customized
Fixed SQL flag evaluator so that users without SQL Level Access privilege can still execute (but not create or edit) SQL flags
Added convenience method generateFlagsForPatient(Patient patient, Set<Role> roles, String displayPointName)
Version 1.2.1
Fixed typo in patientflags_tag_displaypoint table
Version 1.2.0
Added ability to control flag display based on location and a User's role
Added ability to specify custom evaluator types
Misc bug fixes/tweaks
Version 1.1.0
Added ability to display flags in the patient header
Added UI for modifying priority levels
Misc bug fixes/tweaks
Version 1.0.0
Added priority functionality
Fixed bugs with SQL evaluator criteria handling
Version 0.9.0
Initial version with basic functionality