OpenMRS Interoperability and Integration Updates

• LIMS integration

  • OEG integration work is halted until the missing features are implemented.

  • Will touch base weekly to assess the progress and resume work when a number of the features are fixed.

  • Enable SENAITE as the default LIMS option currently in progress (PR in review and a bug reported) https://openmrs.atlassian.net/browse/HIS-15

• Deployment of dev-his.openmrs.org

  • Work necessary in Ozone to build bundled Docker images is now done and currently being deployed (on the Ozone side).

  • Deployment of OpenMRS Distro HIS should be done through a Bamboo job - done by today or tomorrow.

• FHIR API for Odoo

  • Proposed architecture: https://miro.com/app/board/uXjVKv4-SII=/?share_link_id=473611286361

  Open

  

  • Work has started.

    • Odoo Java Client: we will be using the Odoo Java API project as a Java client for Odoo XML RPC API → https://mekomsolutions.atlassian.net/browse/OZ-688 is not necessary anymore.

    • OpenMRS module FHIR Proxy work is started. Will get more updates after the Ozone internal call.

    • HAPI FHIR server work started today. Will get more updates after the Ozone internal call.

• MambaETL

• Ozone Analytics

  • Open sourcing of Ozone Analytics will be started by @Kakumirizi Daud this week.

• LIMS integration

  • OEG integration work is halted until the missing features are implemented.

  • Will touch base weekly to assess the progress and resume work when a number of the features are fixed.

  • Will enable SENAITE as the default LIMS option for now.

• Deployment of dev-his.openmrs.org

  • Delayed few days: init. estimate on end of last week. Looking at mid this week now. (technical work is done so that child distributions can build those Docker-embedded images).

  • Unable to reach out to Rafal. Scott has not answered regarding if a Bamboo job already exists or not.

• FHIR API for Odoo

  • Proposed architecture:

  • Open

    

  • Work has started.

• MambaETL

  • Technical architecture call on Thursday

    • Simplicity of deployment (OMODs and/or SQL script)

    • Ability to dynamically flatten encounters and transpose questions as columns

    • Concerns over:

      • Change Data Capture done through monitoring some specific database fields (date_changed, date_voided…) instead of default mechanisms (binlog…)

      • Performance concerns (due to a lot of indexing) for 10M records databases.

      • Little to no testing.

• Ozone Analytics

  • Open sourcing of Ozone Analytics will be started by @Kakumirizi Daud this week.

• OEG integration

  • Project updates shared by Suruchi: integration work is being delayed (+1 week already) by low responsiveness from OEG devs. Attempting to setup weekly calls.

  • Eudson advises to not implement any workaround and rather wait for OEG folks to answer.

• Deployment of dev-his.openmrs.org

  • Development work needed to deploy embedded distro Docker images is well advanced. Est. done by mid-week.

  • Then reaching out to Rafal in OpenMRS community to deploy via Bamboo.

  • Q: @Emmanuel Nyachoke where to deploy the OpenMRS Distro HIS-embedded Docker images?

• FHIR API for ERPNext (or Odoo)

  • From Slack message Odoo might be a better fit for the default ERP system in Ozone and OpenMRS distro HIS.

  • Work needed to have ERPNext expose a FHIR API still needs to be documented as an example. Current work could be pushed and documented so to be picked up and resumed by other group.

  • ChargeItemDefinition and InventoryItem exposed in Billing & Pharmacy modules needs to start. Mekom will provide guidance. Need to use the https://github.com/ozone-his/fhir-structures-backport-r4/ library.

• MambaETL + Oz Analytics

  • Plan a call this week between UCSF and Mekom to look at Mamba ETL in terms of incremental updates.

• DHIS2 / DHIS Tracker integration:

  • Integration with Tracker. Advises to look at the Ethiori REDCap integration.

  • Integration DHIS2 (analytics). Advises to look at the Ozone Analytics when integrated data analytics.

OEG integration:

• OpenMRS patient and Lab test order is synced in OpenELIS

• Results from OpenELIS are synced in OpenMRS

• Modification of lab order cancels the existing lab order in OpenELIS and creates a new lab order

• Discontinue lab order in OpenMRS cancels the Incoming Order in OpenELIS

Deployment of dev-his.openmrs.org.

• In progress: 2 PRs:

• Work halted this week due to vacations. Will resume next week.

FHIR API for ERPNext:

• Architecture still in progress. Leaning towards running HAPI FHIR to transform and expose FHIR objects from the ERPNext database.

  • Architecture will be defined this week and implementation started the week after.

• Analytics in OpenMRS Distro HIS: Ozone Analytics + Mamba ETL

  • 3 tickets to be worked on:

  • Planned a demo session of Mamba ETL w/ support of incremental changes lead by UCSF. (to be scheduled to next week)

• OEG integration in progress:

  • Notion board: https://www.notion.so/mekom/OpenMRS-disto-HIS-integrated-with-OpenELIS-Global-597eea5b1d6e4305b0dc472b9682d505?pvs=4

  • Automated configuration w/ OEG only supported w/ Liquibase.

  • Unblocked to create Patients visible in new UI.

  • Mid-next week first delivery. Identify exactly what will be demoed by this time. @suruchi dhungana to update.

• Deployment of dev-his.openmrs.org server:

  • Will be looked at tomorrow.

• FHIR specs for ERP Processes completed. Link:

  • Designs for Price + Stock upon ordering will be added in Zeplin today.

    • Need some architecture call with Wyclif regarding exposing the FHIR API of the ERP (and authenticating to it)

• SSO: Should be configurable to be enabled by implementers.

• Custom systems integration:

  • Ethiori being integrated with a custom LIMS. → good progress done in Ethiori hackathon.

  • Used as an example to add more integrations.

• Enabling SENAITE in OpenMRS distro HIS:

  • @Stephen Senkomago Musoke starting evaluation of SENAITE integration.

    • Patients are synced

    • Lab orders not tested as unable create orders with admin users. Reached out on the #ozone channel.

    • Mekom reported some issues with the Lab order basket (unable to revise order).

• DHIS2 integration by @Michael Bontyes . Interested in looking UgandaEMR existing DHIS2 integration.

  • MSF scope: Initialize a new OpenMRS instance with DHIS2 patients (w/ DHIS2 ID + demographics)

    • Using OpenFn to send the new patients and data points.

    • Business logic available on GitHub.